STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CL1_1179Hypothetical protein; COG1772. (188 aa)    
Predicted Functional Partners:
CL1_1180
Signal peptidase I; COG0681.
       0.916
CL1_1177
Hypothetical protein containing peptidase_M19 domain; COG2355.
       0.839
CL1_1178
Hypothetical protein; COG0457.
       0.839
CL1_1176
SAM-dependent methyltransferase 1; COG2521.
 
     0.764
CL1_0646
Hypothetical protein containing metal dependent hydrolase domain; COG1831.
  
     0.642
rpl40e
50S ribosomal protein L40e; COG1552; Belongs to the eukaryotic ribosomal protein eL40 family.
  
     0.586
CL1_0784
5-formaminoimidazole-4-carboxamide-1-(beta)-D- ribofuranosyl 5'-monophosphate synthetase 3; COG1759.
  
     0.515
trmY
Hypothetical protein; Specifically catalyzes the N1-methylation of pseudouridine at position 54 (Psi54) in tRNAs; Belongs to the methyltransferase superfamily. TrmY family.
  
   
 0.492
CL1_1736
Hypothetical protein; COG0175.
  
   
 0.450
CL1_0351
Hypothetical protein; COG1849.
  
     0.443
Your Current Organism:
Thermococcus cleftensis
NCBI taxonomy Id: 163003
Other names: DSM 27260, KACC 17922, T. cleftensis, Thermococcus cleftensis Hensley et al. 2014, Thermococcus sp. CL1, strain CL1
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