STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CL1_1187DNA-binding protein, Tfx type; COG1356. (153 aa)    
Predicted Functional Partners:
CL1_1576
Hypothetical protein; COG2117.
  
     0.576
CL1_1095
Hypothetical protein; COG1361.
  
     0.569
CL1_0350
Hypothetical protein; COG1885; Belongs to the UPF0212 family.
  
     0.560
CL1_0132
Phosphoesterase; COG0618.
  
     0.532
CL1_0282
DNA-directed RNA polymerase subunit F; COG1460.
 
     0.521
CL1_1646
Hypothetical protein; COG1967.
  
     0.521
CL1_2016
Hypothetical protein; COG2266.
  
     0.516
CL1_0851
Hypothetical protein; COG4743.
  
     0.474
CL1_1185
L-fuculose phosphate aldolase; COG0235.
       0.474
CL1_1186
Hypothetical protein.
       0.474
Your Current Organism:
Thermococcus cleftensis
NCBI taxonomy Id: 163003
Other names: DSM 27260, KACC 17922, T. cleftensis, Thermococcus cleftensis Hensley et al. 2014, Thermococcus sp. CL1, strain CL1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.