STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CL1_1192Hypothetical protein; COG1964. (588 aa)    
Predicted Functional Partners:
CL1_1191
Hypothetical protein.
       0.916
CL1_1193
Hypothetical protein.
       0.826
CL1_1194
uracil-DNA glycosylase; COG1573.
       0.810
CL1_1195
Sodium/hydrogen antiporter, NhaC-type; COG1757.
       0.502
CL1_0107
iron(II) transport system protein B; COG0370.
  
   
 0.472
CL1_0883
Putative transcription regulator, TrmB family; COG1378.
 
   
 0.445
CL1_0492
Putative cysteine desulfurase; COG0520.
     
 0.403
Your Current Organism:
Thermococcus cleftensis
NCBI taxonomy Id: 163003
Other names: DSM 27260, KACC 17922, T. cleftensis, Thermococcus cleftensis Hensley et al. 2014, Thermococcus sp. CL1, strain CL1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.