STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CL1_1195Sodium/hydrogen antiporter, NhaC-type; COG1757. (514 aa)    
Predicted Functional Partners:
CL1_1196
GHMP kinase 2; COG1829.
       0.842
lig
ATP-dependent DNA ligase; DNA ligase that seals nicks in double-stranded DNA during DNA replication, DNA recombination and DNA repair; Belongs to the ATP-dependent DNA ligase family.
  
    0.801
CL1_1193
Hypothetical protein.
       0.658
CL1_1194
uracil-DNA glycosylase; COG1573.
       0.658
hisI
Hypothetical protein; COG0139; In the N-terminal section; belongs to the PRA-CH family.
       0.658
CL1_1382
Sodium:solute symporter family protein; COG0591; Belongs to the sodium:solute symporter (SSF) (TC 2.A.21) family.
 
  
 0.566
CL1_1191
Hypothetical protein.
       0.523
CL1_0543
Sodium-dependent transporter; COG0733; Belongs to the sodium:neurotransmitter symporter (SNF) (TC 2.A.22) family.
 
   
 0.516
CL1_1192
Hypothetical protein; COG1964.
       0.502
CL1_0194
Putative monovalent cation/H+ antiporter 1 subunit B; COG2111.
      
 0.437
Your Current Organism:
Thermococcus cleftensis
NCBI taxonomy Id: 163003
Other names: DSM 27260, KACC 17922, T. cleftensis, Thermococcus cleftensis Hensley et al. 2014, Thermococcus sp. CL1, strain CL1
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