STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CL1_1232Hypothetical protein containing ACT domain 2; COG2150. (197 aa)    
Predicted Functional Partners:
CL1_0014
Hypothetical protein containing SAM domain 1; COG1244.
  
     0.665
CL1_1233
Hypothetical protein containing ribokinase-like domain 2; COG0524; Belongs to the carbohydrate kinase PfkB family.
       0.632
CL1_1211
Hypothetical protein; COG1549.
  
     0.612
CL1_1591
Hypothetical protein.
  
     0.605
CL1_0154
Metalloprotease containing JAB1/MPN domain; COG1310.
  
     0.551
CL1_1644
Hypothetical protein; COG1860; Belongs to the UPF0179 family.
  
     0.533
CL1_2004
Hypothetical protein; COG1395.
 
     0.491
CL1_0162
recJ-like single-stranded DNA exonuclease; COG0608.
  
     0.473
CL1_2034
Hypothetical protein; COG1917.
  
     0.461
CL1_1740
Hypothetical protein; COG1326.
  
     0.460
Your Current Organism:
Thermococcus cleftensis
NCBI taxonomy Id: 163003
Other names: DSM 27260, KACC 17922, T. cleftensis, Thermococcus cleftensis Hensley et al. 2014, Thermococcus sp. CL1, strain CL1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.