STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CL1_1273Putative modulator of DNA gyrase, PmbA/TldD protein-like protein 2; COG0312. (432 aa)    
Predicted Functional Partners:
CL1_1272
Putative modulator of DNA gyrase, PmbA/TldD protein-like protein 1; COG0312.
 
   
0.938
CL1_1274
Hypothetical protein.
       0.853
CL1_1275
Cyclomaltodextrin glucanotransferase; COG0366.
       0.801
CL1_1270
Hypothetical protein.
       0.774
CL1_1271
Transcription regulator, ArsR family 8; COG3398.
       0.593
CL1_0547
Hypothetical protein containing fibronectin-binding protein; COG1293.
   
    0.448
CL1_1880
Zinc-dependent protease, TldD/PmbA family 2; COG0312.
 
   
0.406
Your Current Organism:
Thermococcus cleftensis
NCBI taxonomy Id: 163003
Other names: DSM 27260, KACC 17922, T. cleftensis, Thermococcus cleftensis Hensley et al. 2014, Thermococcus sp. CL1, strain CL1
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