STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CL1_1275Cyclomaltodextrin glucanotransferase; COG0366. (705 aa)    
Predicted Functional Partners:
CL1_0412
Alpha-glucan phosphorylase; COG0058.
 
 0.945
CL1_1040
Cytoplasmic alpha-amylase; COG0366.
  
  
 0.943
CL1_0972
4-alpha-Glucanotransferase; COG1449.
    
 0.939
CL1_0884
Cyclomaltodextrinase; COG0366.
  
  
 
0.930
CL1_0091
Pullulanase type II; COG0366.
  
  
0.929
CL1_0546
Glycogen branching enzyme; COG1543; Belongs to the glycosyl hydrolase 57 family.
    
 0.910
CL1_1274
Hypothetical protein.
       0.866
CL1_1273
Putative modulator of DNA gyrase, PmbA/TldD protein-like protein 2; COG0312.
       0.801
CL1_1272
Putative modulator of DNA gyrase, PmbA/TldD protein-like protein 1; COG0312.
       0.780
CL1_1898
Amino acid transporter; COG0531.
  
 0.769
Your Current Organism:
Thermococcus cleftensis
NCBI taxonomy Id: 163003
Other names: DSM 27260, KACC 17922, T. cleftensis, Thermococcus cleftensis Hensley et al. 2014, Thermococcus sp. CL1, strain CL1
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