STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CL1_1275Cyclomaltodextrin glucanotransferase; COG0366. (705 aa)    
Predicted Functional Partners:
CL1_0885
Maltooligosaccharide transport system substrate-binding protein; COG2182.
 
  
 0.798
CL1_1898
Amino acid transporter; COG0531.
  
 0.782
CL1_0886
Maltooligosaccharide transport system permease protein 1; COG1175.
 
  
 0.729
CL1_1274
Hypothetical protein.
       0.702
CL1_0882
Glycogen synthase; COG0297.
 
  
 0.680
CL1_0887
Maltooligosaccharide transport system permease protein 2; COG3833.
 
  
 0.649
CL1_1342
Hypothetical protein containing HAD-like domain 7; COG0463.
  
  
 0.632
CL1_1273
Putative modulator of DNA gyrase, PmbA/TldD protein-like protein 2; COG0312.
       0.557
CL1_1272
Putative modulator of DNA gyrase, PmbA/TldD protein-like protein 1; COG0312.
       0.553
CL1_0850
Glycoside hydrolase family 57 protein; COG0366.
   
 0.528
Your Current Organism:
Thermococcus cleftensis
NCBI taxonomy Id: 163003
Other names: DSM 27260, KACC 17922, T. cleftensis, Thermococcus cleftensis Hensley et al. 2014, Thermococcus sp. CL1, strain CL1
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