STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CL1_1281Hypothetical protein; COG1305. (1073 aa)    
Predicted Functional Partners:
CL1_1280
Hypothetical protein.
       0.872
CL1_1279
Hypothetical protein; COG1721.
 
  
 0.834
CL1_1282
btpA family protein (btpA); COG0434.
 
     0.753
CL1_1015
Hypothetical protein; COG1721.
 
  
 0.740
CL1_1517
Putative AAA-type ATPase chaperone 3; COG0714.
 
  
 0.738
CL1_1016
Putative AAA-type ATPase chaperone 2; COG0714.
 
  
 0.737
CL1_0846
Putative AAA-type ATPase chaperone 1; COG0714.
 
  
 0.715
CL1_1278
Hypothetical protein; COG3842.
       0.701
CL1_1520
Hypothetical protein; COG1721.
 
  
 0.698
CL1_1277
Hypothetical protein.
       0.645
Your Current Organism:
Thermococcus cleftensis
NCBI taxonomy Id: 163003
Other names: DSM 27260, KACC 17922, T. cleftensis, Thermococcus cleftensis Hensley et al. 2014, Thermococcus sp. CL1, strain CL1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.