STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CL1_1301Putative dioxygenase; COG3885. (263 aa)    
Predicted Functional Partners:
CL1_1302
Threonine synthase 2; COG0498.
       0.818
CL1_1303
Hypothetical protein.
       0.818
psmB-2
Proteasome subunit beta 2; Component of the proteasome core, a large protease complex with broad specificity involved in protein degradation.
       0.687
CL1_1305
iron(III)-siderophore ABC transporter ATPase 2; COG1120.
  
    0.575
CL1_1306
iron(III)-siderophore ABC transporter permease 2; COG0609.
  
    0.575
CL1_1818
CRISPR-associated Cas6 family protein 2; COG1583.
  
     0.444
CL1_0702
Hypothetical protein; COG2078.
 
     0.412
CL1_1952
CRISPR-associated Cas6 family protein 3; COG1583.
  
     0.403
Your Current Organism:
Thermococcus cleftensis
NCBI taxonomy Id: 163003
Other names: DSM 27260, KACC 17922, T. cleftensis, Thermococcus cleftensis Hensley et al. 2014, Thermococcus sp. CL1, strain CL1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.