STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CL1_1332Transcription regulator, AbrB/SpoV family; COG0704. (304 aa)    
Predicted Functional Partners:
CL1_1334
Hypothetical protein; COG0477.
 
  
 0.727
CL1_1331
Major facilitator superfamily permease 9; COG0477.
 
  
 0.723
CL1_1333
L-asparaginase; COG1446.
       0.675
CL1_1335
Hypothetical protein; COG2516.
       0.675
ribK
Putative transcription regulator, MarR family 1; Catalyzes the CTP-dependent phosphorylation of riboflavin (vitamin B2) to form flavin mononucleotide (FMN); Belongs to the archaeal riboflavin kinase family.
  
     0.653
dtdA
Hypothetical protein; D-aminoacyl-tRNA deacylase with broad substrate specificity. By recycling D-aminoacyl-tRNA to D-amino acids and free tRNA molecules, this enzyme counteracts the toxicity associated with the formation of D-aminoacyl-tRNA entities in vivo.
 
     0.569
CL1_0704
Hypothetical protein; COG2237.
  
     0.563
CL1_0839
Putative oligosaccharyl transferase, STT3 subunit 1; COG1287.
  
     0.563
CL1_0448
Hypothetical protein; Involved in DNA damage repair.
 
     0.558
CL1_1058
Cell division control protein 6; Involved in regulation of DNA replication.
  
     0.551
Your Current Organism:
Thermococcus cleftensis
NCBI taxonomy Id: 163003
Other names: DSM 27260, KACC 17922, T. cleftensis, Thermococcus cleftensis Hensley et al. 2014, Thermococcus sp. CL1, strain CL1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.