STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CL1_1335Hypothetical protein; COG2516. (322 aa)    
Predicted Functional Partners:
CL1_1115
Hypothetical protein containing radical SAM domain; COG1856.
 
  
 0.987
CL1_1333
L-asparaginase; COG1446.
       0.916
CL1_1334
Hypothetical protein; COG0477.
       0.916
CL1_1332
Transcription regulator, AbrB/SpoV family; COG0704.
       0.853
CL1_1331
Major facilitator superfamily permease 9; COG0477.
 
     0.769
CL1_0134
Putative drug/metabolite transporter 1; COG0697.
       0.483
CL1_1181
Lipoate-protein ligase A related protein; COG0095.
 
     0.478
gcvH
Glycine cleavage system protein H; The glycine cleavage system catalyzes the degradation of glycine. The H protein shuttles the methylamine group of glycine from the P protein to the T protein.
     
 0.462
CL1_0209
Hypothetical protein.
  
     0.427
Your Current Organism:
Thermococcus cleftensis
NCBI taxonomy Id: 163003
Other names: DSM 27260, KACC 17922, T. cleftensis, Thermococcus cleftensis Hensley et al. 2014, Thermococcus sp. CL1, strain CL1
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