STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CL1_1341Glycosyl transferase family 4 protein; COG0472. (302 aa)    
Predicted Functional Partners:
CL1_1342
Hypothetical protein containing HAD-like domain 7; COG0463.
 
  
 0.908
glmS
Glucosamine-fructose-6-phosphate aminotransferase; Catalyzes the first step in hexosamine metabolism, converting fructose-6P into glucosamine-6P using glutamine as a nitrogen source.
 
  
 0.676
CL1_1343
Hypothetical protein; COG2456.
     
 0.652
CL1_0998
Hypothetical protein containing peptidase M50 domain 2; COG0750.
 
   0.637
uppS
Undecaprenyl pyrophosphate synthase; Catalyzes the sequential condensation of isopentenyl diphosphate (IPP) with geranylgeranyl diphosphate (GGPP) to yield (2Z,6Z,10Z,14Z,18Z,22Z,26Z,30E,34E,38E)-undecaprenyl diphosphate (tritrans,heptacis-UPP). It is probably the precursor of glycosyl carrier lipids.
 
  
 0.615
CL1_1601
Asparagine synthase; COG0367.
 
 
 0.596
CL1_0825
Pleiotropic regulatory protein, pyridoxal-phosphate-dependent aminotransferase (degT); COG0399; Belongs to the DegT/DnrJ/EryC1 family.
  
  
 0.514
CL1_0748
Glycosyl transferase family 2 protein 2; COG0463.
  
  
 0.512
CL1_0183
Putative UDP-N-acetyl-D-mannosaminuronate dehydrogenase; COG0677; Belongs to the UDP-glucose/GDP-mannose dehydrogenase family.
  
  
 0.509
CL1_0184
Putative UDP-N-acetylglucosamine 2-epimerase; COG0381.
  
  
 0.509
Your Current Organism:
Thermococcus cleftensis
NCBI taxonomy Id: 163003
Other names: DSM 27260, KACC 17922, T. cleftensis, Thermococcus cleftensis Hensley et al. 2014, Thermococcus sp. CL1, strain CL1
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