CL1_1369 protein (Thermococcus cleftensis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

CL1_1369

Hypothetical protein; COG0665. (388 aa)

Predicted Functional Partners:

CL1_1368

0.976

CL1_1366

0.970

gcvT

0.958

CL1_1367

0.925

CL1_1381

0.925

pyrH

0.645

fni

0.585

CL1_0633

0.537

CL1_0424

0.506

CL1_1898

0.465

Your Current Organism:

Thermococcus cleftensis

NCBI taxonomy Id: 163003
Other names: DSM 27260, KACC 17922, T. cleftensis, Thermococcus cleftensis Hensley et al. 2014, Thermococcus sp. CL1, strain CL1

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CL1_0424	CL1_1366	CL1_0424	CL1_1366	Anaerobic glycerol-3-phosphate dehydrogenase subunit A; COG0579.	Hypothetical protein; COG0446.	0.439
CL1_0424	CL1_1369	CL1_0424	CL1_1369	Anaerobic glycerol-3-phosphate dehydrogenase subunit A; COG0579.	Hypothetical protein; COG0665.	0.506
CL1_0424	CL1_1898	CL1_0424	CL1_1898	Anaerobic glycerol-3-phosphate dehydrogenase subunit A; COG0579.	Amino acid transporter; COG0531.	0.596
CL1_0424	fni	CL1_0424	CL1_0566	Anaerobic glycerol-3-phosphate dehydrogenase subunit A; COG0579.	Isopentenyl pyrophosphate isomerase; Involved in the biosynthesis of isoprenoids. Catalyzes the 1,3-allylic rearrangement of the homoallylic substrate isopentenyl (IPP) to its allylic isomer, dimethylallyl diphosphate (DMAPP).	0.476
CL1_0633	CL1_1369	CL1_0633	CL1_1369	Hypothetical protein; COG0075.	Hypothetical protein; COG0665.	0.537
CL1_0633	fni	CL1_0633	CL1_0566	Hypothetical protein; COG0075.	Isopentenyl pyrophosphate isomerase; Involved in the biosynthesis of isoprenoids. Catalyzes the 1,3-allylic rearrangement of the homoallylic substrate isopentenyl (IPP) to its allylic isomer, dimethylallyl diphosphate (DMAPP).	0.808
CL1_0633	gcvT	CL1_0633	CL1_1227	Hypothetical protein; COG0075.	Glycine cleavage system aminomethyltransferase T; The glycine cleavage system catalyzes the degradation of glycine.	0.432
CL1_1366	CL1_0424	CL1_1366	CL1_0424	Hypothetical protein; COG0446.	Anaerobic glycerol-3-phosphate dehydrogenase subunit A; COG0579.	0.439
CL1_1366	CL1_1367	CL1_1366	CL1_1367	Hypothetical protein; COG0446.	Putative ferredoxin; COG1142.	0.997
CL1_1366	CL1_1368	CL1_1366	CL1_1368	Hypothetical protein; COG0446.	Hypothetical protein; COG0446.	0.940
CL1_1366	CL1_1369	CL1_1366	CL1_1369	Hypothetical protein; COG0446.	Hypothetical protein; COG0665.	0.970
CL1_1366	CL1_1381	CL1_1366	CL1_1381	Hypothetical protein; COG0446.	Hypothetical protein; COG0446.	0.601
CL1_1366	gcvT	CL1_1366	CL1_1227	Hypothetical protein; COG0446.	Glycine cleavage system aminomethyltransferase T; The glycine cleavage system catalyzes the degradation of glycine.	0.905
CL1_1366	pyrH	CL1_1366	CL1_1372	Hypothetical protein; COG0446.	Uridylate kinase; Catalyzes the reversible phosphorylation of UMP to UDP.	0.519
CL1_1367	CL1_1366	CL1_1367	CL1_1366	Putative ferredoxin; COG1142.	Hypothetical protein; COG0446.	0.997
CL1_1367	CL1_1368	CL1_1367	CL1_1368	Putative ferredoxin; COG1142.	Hypothetical protein; COG0446.	0.946
CL1_1367	CL1_1369	CL1_1367	CL1_1369	Putative ferredoxin; COG1142.	Hypothetical protein; COG0665.	0.925
CL1_1367	CL1_1381	CL1_1367	CL1_1381	Putative ferredoxin; COG1142.	Hypothetical protein; COG0446.	0.849
CL1_1367	pyrH	CL1_1367	CL1_1372	Putative ferredoxin; COG1142.	Uridylate kinase; Catalyzes the reversible phosphorylation of UMP to UDP.	0.602
CL1_1368	CL1_1366	CL1_1368	CL1_1366	Hypothetical protein; COG0446.	Hypothetical protein; COG0446.	0.940