STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CL1_1386Transcription regulator, AsnC family 6; COG1522. (150 aa)    
Predicted Functional Partners:
CL1_1387
Intracellular protease 1; COG0693.
   
   0.850
CL1_1168
Transcription regulator, AsnC family 3; COG1522.
   
 
 0.846
CL1_1385
GTP-binding protein 2; COG1163.
       0.835
CL1_0369
Transcription regulator, TrmB family 1; COG1378.
      
 0.776
CL1_1390
ATP:dephospho-CoA triphosphoribosyl transferase; COG1767.
       0.651
CL1_1388
Hypothetical protein; COG1983.
       0.545
CL1_1389
Hypothetical protein.
       0.545
CL1_1712
asparaginyl-tRNA synthetase; COG0017.
  
  
 0.417
CL1_0155
Transcription regulator, ArsR family 2; COG0640.
   
  
 0.408
Your Current Organism:
Thermococcus cleftensis
NCBI taxonomy Id: 163003
Other names: DSM 27260, KACC 17922, T. cleftensis, Thermococcus cleftensis Hensley et al. 2014, Thermococcus sp. CL1, strain CL1
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