STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CL1_1410Hypothetical protein; COG1542. (567 aa)    
Predicted Functional Partners:
CL1_1700
Hypothetical protein.
 
     0.743
CL1_1313
Replication factor C small subunit; COG1372.
  
     0.737
CL1_0877
Hypothetical protein containing PIN domain 17; COG1487.
  
     0.611
CL1_1412
Putative histone deacetylase; COG0123.
 
     0.609
CL1_1409
Hypothetical protein; COG1844.
       0.603
tbp
TATA-box binding protein; General factor that plays a role in the activation of archaeal genes transcribed by RNA polymerase. Binds specifically to the TATA box promoter element which lies close to the position of transcription initiation.
       0.601
CL1_0159
Putative RNA-binding protein containing THUMP domain; COG1818.
  
     0.574
CL1_1176
SAM-dependent methyltransferase 1; COG2521.
  
     0.545
CL1_0924
Hypothetical protein; COG0037.
  
     0.534
CL1_1952
CRISPR-associated Cas6 family protein 3; COG1583.
  
     0.524
Your Current Organism:
Thermococcus cleftensis
NCBI taxonomy Id: 163003
Other names: DSM 27260, KACC 17922, T. cleftensis, Thermococcus cleftensis Hensley et al. 2014, Thermococcus sp. CL1, strain CL1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.