STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CL1_1413Na+/H+ antiporter; COG0025. (439 aa)    
Predicted Functional Partners:
CL1_1898
Amino acid transporter; COG0531.
   
 
 0.682
tbp
TATA-box binding protein; General factor that plays a role in the activation of archaeal genes transcribed by RNA polymerase. Binds specifically to the TATA box promoter element which lies close to the position of transcription initiation.
 
     0.573
CL1_1412
Putative histone deacetylase; COG0123.
   
 
 0.564
CL1_1710
Ca2+/Na+ antiporter; COG0530.
 
 
 
 0.501
CL1_1410
Hypothetical protein; COG1542.
 
     0.464
CL1_0582
Hypothetical protein; COG0639.
   
 
 0.446
CL1_0807
DNA helicase; COG1112.
   
 
 0.446
CL1_1588
Putative metallophosphoesterase; COG0639.
   
 
 0.446
CL1_0295
Putative potassium uptake protein; COG0168.
 
 
 
 0.444
CL1_0937
Trk-type pottasium transport system, NAD-binding component; COG0569.
 
   
 0.425
Your Current Organism:
Thermococcus cleftensis
NCBI taxonomy Id: 163003
Other names: DSM 27260, KACC 17922, T. cleftensis, Thermococcus cleftensis Hensley et al. 2014, Thermococcus sp. CL1, strain CL1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.