STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CL1_1417Putative metal-dependent hydrolase; COG2220; Belongs to the UPF0173 family. (224 aa)    
Predicted Functional Partners:
CL1_0365
Bifunctional D-arabino 3-hexulose-6-phosphate formaldehyde lyase/phosphohexuloisomerase; COG0794.
     
 0.719
CL1_1418
Hypothetical protein; COG2247.
  
    0.711
CL1_1416
acetyl-CoA synthetase II (NDP forming) subunit alpha; COG1042.
       0.607
CL1_1414
Indolepyruvate ferredoxin oxidoreductase, beta subunit 2; COG1014.
       0.602
CL1_1415
Indolepyruvate ferredoxin oxidoreductase, alpha subunit 2; Catalyzes the ferredoxin-dependent oxidative decarboxylation of arylpyruvates.
       0.602
Your Current Organism:
Thermococcus cleftensis
NCBI taxonomy Id: 163003
Other names: DSM 27260, KACC 17922, T. cleftensis, Thermococcus cleftensis Hensley et al. 2014, Thermococcus sp. CL1, strain CL1
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