Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
CL1_1421Glycosyl transferase family 1 protein; COG0438. (379 aa)    
Predicted Functional Partners:
CL1_0546
Glycogen branching enzyme; COG1543; Belongs to the glycosyl hydrolase 57 family.
  
 0.883
CL1_1422
4-hydroxybenzoate octaprenyltransferase; COG0382.
     
 0.746
CL1_1420
Hypothetical protein.
       0.705
speE
Spermidine synthase; Catalyzes the irreversible transfer of a propylamine group from the amino donor S-adenosylmethioninamine (decarboxy-AdoMet) to putrescine (1,4-diaminobutane) to yield spermidine; Belongs to the spermidine/spermine synthase family.
       0.641
CL1_1342
Hypothetical protein containing HAD-like domain 7; COG0463.
 
  
 0.582
CL1_1419
Hypothetical protein.
       0.549
CL1_1795
UDP-glucose 4-epimerase; COG0451.
 
  
 0.537
CL1_0109
Putative sugar-phosphate nucleotidyltransferase; COG1208.
 
 
 0.532
CL1_1971
Glycosyl transferase family 2 protein 3; COG0463.
 
  
 0.518
CL1_0414
Putative mannose-1-phosphate guanylyltransferase; COG1208.
 
 
 0.491
Your Current Organism:
Thermococcus cleftensis
NCBI taxonomy Id: 163003
Other names: DSM 27260, KACC 17922, T. cleftensis, Thermococcus cleftensis Hensley et al. 2014, Thermococcus sp. CL1, strain CL1
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