STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CL1_1421Glycosyl transferase family 1 protein; COG0438. (379 aa)    
Predicted Functional Partners:
CL1_0546
Glycogen branching enzyme; COG1543; Belongs to the glycosyl hydrolase 57 family.
  
 0.885
CL1_1422
4-hydroxybenzoate octaprenyltransferase; COG0382.
     
 0.755
CL1_1420
Hypothetical protein.
       0.708
speE
Spermidine synthase; Catalyzes the irreversible transfer of a propylamine group from the amino donor S-adenosylmethioninamine (decarboxy-AdoMet) to putrescine (1,4-diaminobutane) to yield spermidine; Belongs to the spermidine/spermine synthase family.
     
 0.647
CL1_1342
Hypothetical protein containing HAD-like domain 7; COG0463.
 
  
 0.615
CL1_1795
UDP-glucose 4-epimerase; COG0451.
 
  
 0.573
CL1_0109
Putative sugar-phosphate nucleotidyltransferase; COG1208.
 
 
 0.562
CL1_0418
Hypothetical protein; COG1073.
   
 
 0.553
CL1_0748
Glycosyl transferase family 2 protein 2; COG0463.
 
  
 0.550
CL1_1419
Hypothetical protein.
       0.549
Your Current Organism:
Thermococcus cleftensis
NCBI taxonomy Id: 163003
Other names: DSM 27260, KACC 17922, T. cleftensis, Thermococcus cleftensis Hensley et al. 2014, Thermococcus sp. CL1, strain CL1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.