STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CL1_1454Hypothetical protein; COG0428. (269 aa)    
Predicted Functional Partners:
CL1_1455
Hypothetical protein; COG1931; Belongs to the UPF0201 family.
       0.647
CL1_0980
Putative cation efflux system protein; COG0053.
 
  
 0.567
CL1_1851
Cadmium-translocating P-type ATPase; COG2217.
 
  
 0.562
CL1_0543
Sodium-dependent transporter; COG0733; Belongs to the sodium:neurotransmitter symporter (SNF) (TC 2.A.22) family.
 
  
 0.547
CL1_0712
Metal ion-dependent transcription regulator, DtxR family; COG1321.
  
  
 0.535
CL1_0212
Transmembrane electron transport protein; COG0785.
  
    0.483
CL1_1845
Cytochrome c-type biogenesis protein; COG0785.
  
    0.483
Your Current Organism:
Thermococcus cleftensis
NCBI taxonomy Id: 163003
Other names: DSM 27260, KACC 17922, T. cleftensis, Thermococcus cleftensis Hensley et al. 2014, Thermococcus sp. CL1, strain CL1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.