STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
CL1_1457Putative ABC type transporter, ATPase; COG1131. (252 aa)    
Predicted Functional Partners:
CL1_1456
Putative ABC-2 type transporter; COG1668.
 
  
 0.954
CL1_1458
Hypothetical protein; COG1476.
     
 0.901
CL1_1460
Hypothetical protein; COG0180.
       0.899
CL1_1459
Hypothetical protein; COG0601.
       0.749
CL1_1677
ABC type multidrug transporter permease; COG0842.
 
  
 0.604
CL1_0094
Na+-driven multidrug efflux pump protein; COG0534.
  
  
 0.416
CL1_0509
Multi antimicrobial extrusion protein MatE 1; COG0534.
  
  
 0.416
CL1_0510
Multi antimicrobial extrusion protein MatE 2; COG0534.
  
  
 0.416
rpl2
50S ribosomal protein L2P; One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity; this is somewhat controversial. Makes several contacts with the 16S rRNA in the 70S ribosome. Belongs to the universal ribosomal protein uL2 family.
  
   0.402
Your Current Organism:
Thermococcus cleftensis
NCBI taxonomy Id: 163003
Other names: DSM 27260, KACC 17922, T. cleftensis, Thermococcus cleftensis Hensley et al. 2014, Thermococcus sp. CL1, strain CL1
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