STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CL1_1457Putative ABC type transporter, ATPase; COG1131. (252 aa)    
Predicted Functional Partners:
CL1_1456
Putative ABC-2 type transporter; COG1668.
 
  
 0.901
CL1_1458
Hypothetical protein; COG1476.
     
 0.782
CL1_1460
Hypothetical protein; COG0180.
       0.778
CL1_1459
Hypothetical protein; COG0601.
       0.737
CL1_1677
ABC type multidrug transporter permease; COG0842.
 
  
 0.608
CL1_0333
Hypothetical protein; COG1277.
  
 
 0.549
CL1_1164
ABC type transporter permease 2; COG1277.
  
 
 0.549
CL1_1165
ABC type transporter permease 3; COG1277.
  
 
 0.549
CL1_1979
Hypothetical protein; COG1277.
  
 
 0.549
rpl2
50S ribosomal protein L2P; One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity; this is somewhat controversial. Makes several contacts with the 16S rRNA in the 70S ribosome. Belongs to the universal ribosomal protein uL2 family.
  
 
   0.400
Your Current Organism:
Thermococcus cleftensis
NCBI taxonomy Id: 163003
Other names: DSM 27260, KACC 17922, T. cleftensis, Thermococcus cleftensis Hensley et al. 2014, Thermococcus sp. CL1, strain CL1
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