STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CL1_1502DNA methlyase; COG1041. (366 aa)    
Predicted Functional Partners:
CL1_1503
Hypothetical protein.
       0.635
CL1_1505
Hypothetical protein; COG0432.
       0.635
CL1_0230
Ribosomal biogenesis protein; Probably involved in the biogenesis of the ribosome.
  
    0.617
CL1_1504
Hypothetical protein.
       0.602
CL1_0501
Putative nonsense-mediated mRNA decay protein, NMD3-family; COG1499.
  
    0.598
tmcA
Hypothetical protein; Catalyzes the formation of N(4)-acetylcytidine (ac(4)C) at the wobble position of tRNA(Met), by using acetyl-CoA as an acetyl donor and ATP (or GTP).
  
  
 0.581
CL1_0288
Putative GTP-binding protein; COG1084.
 
    0.551
CL1_0104
Putative ATPase 1; COG0037.
  
 
 0.532
CL1_1640
Hypothetical protein containing PIN domain 3; COG1439.
  
    0.518
CL1_1442
tRNA methyltransferase, GCD14 type; COG2519.
   
  
 0.488
Your Current Organism:
Thermococcus cleftensis
NCBI taxonomy Id: 163003
Other names: DSM 27260, KACC 17922, T. cleftensis, Thermococcus cleftensis Hensley et al. 2014, Thermococcus sp. CL1, strain CL1
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