STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CL1_1543GNAT family acetyltransferase 2; COG0454. (270 aa)    
Predicted Functional Partners:
CL1_0494
Hypothetical protein; COG1226.
  
    0.647
CL1_1544
Hypothetical protein.
       0.599
CL1_1039
Putative transcription regulator, ArsR family; COG0640.
  
   
 0.575
CL1_1037
Transcription regulator, ArsR family 7; COG0640.
  
   
 0.509
CL1_0507
Glycosyl transferase family protein 6; COG1807.
 
   
 0.502
CL1_1720
Putative Serine/threonine protein phosphatase; COG0631.
   
   0.450
CL1_1952
CRISPR-associated Cas6 family protein 3; COG1583.
  
     0.434
CL1_1542
Hypothetical protein.
       0.432
CL1_0386
Transcription regulator, ArsR family 5; COG1777.
 
     0.430
CL1_1541
Hypothetical protein; COG2866.
       0.428
Your Current Organism:
Thermococcus cleftensis
NCBI taxonomy Id: 163003
Other names: DSM 27260, KACC 17922, T. cleftensis, Thermococcus cleftensis Hensley et al. 2014, Thermococcus sp. CL1, strain CL1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.