STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CL1_1555Protein-tyrosine phosphatase; COG2453. (150 aa)    
Predicted Functional Partners:
CL1_1720
Putative Serine/threonine protein phosphatase; COG0631.
  
 
 0.833
CL1_1722
Hypothetical protein containing WD40 repeat; COG2319.
  
 0.772
CL1_1728
Hypothetical protein; COG2319.
  
 0.772
rpl40e
50S ribosomal protein L40e; COG1552; Belongs to the eukaryotic ribosomal protein eL40 family.
   
  0.764
CL1_1602
GTPase; COG1100.
  
 0.675
CL1_1554
Hypothetical protein; COG4902.
       0.654
CL1_1721
Putative Serine/threonine protein kinase; COG0515.
  
 0.612
CL1_1724
Putiative protein kinase 1; COG0515.
  
 0.606
CL1_1726
Putiative protein kinase 2; COG0515.
  
 0.606
CL1_1727
Putiative protein kinase 3; COG0515.
  
 0.599
Your Current Organism:
Thermococcus cleftensis
NCBI taxonomy Id: 163003
Other names: DSM 27260, KACC 17922, T. cleftensis, Thermococcus cleftensis Hensley et al. 2014, Thermococcus sp. CL1, strain CL1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.