STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CL1_1555Protein-tyrosine phosphatase; COG2453. (150 aa)    
Predicted Functional Partners:
CL1_1722
Hypothetical protein containing WD40 repeat; COG2319.
  
 0.799
CL1_1728
Hypothetical protein; COG2319.
  
 0.799
CL1_1720
Putative Serine/threonine protein phosphatase; COG0631.
  
 
 0.757
CL1_1602
GTPase; COG1100.
  
 0.686
CL1_1721
Putative Serine/threonine protein kinase; COG0515.
  
 0.678
CL1_1724
Putiative protein kinase 1; COG0515.
  
 0.673
CL1_1726
Putiative protein kinase 2; COG0515.
  
 0.673
CL1_1727
Putiative protein kinase 3; COG0515.
  
 0.667
eif6
Translation initiation factor IF-6; Binds to the 50S ribosomal subunit and prevents its association with the 30S ribosomal subunit to form the 70S initiation complex.
  
 
 0.595
CL1_0501
Putative nonsense-mediated mRNA decay protein, NMD3-family; COG1499.
   
 
 0.589
Your Current Organism:
Thermococcus cleftensis
NCBI taxonomy Id: 163003
Other names: DSM 27260, KACC 17922, T. cleftensis, Thermococcus cleftensis Hensley et al. 2014, Thermococcus sp. CL1, strain CL1
Server load: medium (42%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.