STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CL1_1571methylmalonyl-CoA mutase, alpha chain; COG1884. (562 aa)    
Predicted Functional Partners:
CL1_1609
methylmalonyl-CoA mutase, C-terminal domain protein; COG2185.
 0.999
CL1_1610
Lysine/arginine/ornithine transport system kinase; COG1703.
  
 0.988
CL1_1611
methylmalonyl-CoA epimerase; COG0346.
 
  
 0.957
CL1_0007
2-oxoglutarate ferredoxin oxidoreductase subunit gamma 1; COG1014.
    
 0.911
CL1_0008
2-oxoglutarate ferredoxin oxidoreductase subunit beta 1; COG1013.
    
 0.911
CL1_0009
2-oxoglutarate ferredoxin oxidoreductase subunit alpha 1; COG0674.
    
 0.911
CL1_0010
2-oxoglutarate ferredoxin oxidoreductase subunit gamma 2; COG1014.
    
 0.911
CL1_0011
2-oxoglutarate ferredoxin oxidoreductase subunit beta 2; COG1013.
    
 0.911
CL1_0012
2-oxoglutarate ferredoxin oxidoreductase subunit alpha 2; COG0674.
    
 0.911
CL1_0013
2-oxoglutarate ferredoxin oxidoreductase subunit delta; COG1146.
    
 0.904
Your Current Organism:
Thermococcus cleftensis
NCBI taxonomy Id: 163003
Other names: DSM 27260, KACC 17922, T. cleftensis, Thermococcus cleftensis Hensley et al. 2014, Thermococcus sp. CL1, strain CL1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.