STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CL1_1591Hypothetical protein. (257 aa)    
Predicted Functional Partners:
CL1_1590
Cell division protein containing CDC48 domain 2; COG0464.
     
 0.835
CL1_1211
Hypothetical protein; COG1549.
 
     0.671
CL1_1589
Hypothetical protein; COG1873.
       0.654
CL1_2034
Hypothetical protein; COG1917.
  
     0.631
CL1_0386
Transcription regulator, ArsR family 5; COG1777.
  
     0.622
CL1_1232
Hypothetical protein containing ACT domain 2; COG2150.
  
     0.605
CL1_0415
Phospho-sugar mutase-like protein; COG1109.
  
     0.570
CL1_0189
Hypothetical protein containing ACT domain 1; COG2150.
  
     0.568
CL1_0499
Major facilitator superfamily permease 4; COG0477.
  
     0.538
CL1_0369
Transcription regulator, TrmB family 1; COG1378.
  
     0.516
Your Current Organism:
Thermococcus cleftensis
NCBI taxonomy Id: 163003
Other names: DSM 27260, KACC 17922, T. cleftensis, Thermococcus cleftensis Hensley et al. 2014, Thermococcus sp. CL1, strain CL1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.