STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CL1_1599Glycosyl transferase family protein 4; COG0438. (338 aa)    
Predicted Functional Partners:
CL1_1598
Putative translation factor, sua5 family; Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine.
 
     0.704
CL1_1600
Hypothetical protein; COG2247.
  
    0.623
CL1_1601
Asparagine synthase; COG0367.
 
  
 0.621
CL1_1342
Hypothetical protein containing HAD-like domain 7; COG0463.
 
  
 0.585
CL1_0546
Glycogen branching enzyme; COG1543; Belongs to the glycosyl hydrolase 57 family.
  
 0.575
CL1_1971
Glycosyl transferase family 2 protein 3; COG0463.
 
  
 0.553
CL1_1597
Hypothetical protein; COG0457.
  
 
 0.518
CL1_1795
UDP-glucose 4-epimerase; COG0451.
 
  
 0.516
CL1_0748
Glycosyl transferase family 2 protein 2; COG0463.
 
  
 0.494
CL1_0412
Alpha-glucan phosphorylase; COG0058.
 
 
 0.484
Your Current Organism:
Thermococcus cleftensis
NCBI taxonomy Id: 163003
Other names: DSM 27260, KACC 17922, T. cleftensis, Thermococcus cleftensis Hensley et al. 2014, Thermococcus sp. CL1, strain CL1
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