STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CL1_1603ATPase, MinD family 2; COG0455. (245 aa)    
Predicted Functional Partners:
CL1_1602
GTPase; COG1100.
       0.916
CL1_1604
Putative ATPase containing PIN domain; COG1855.
     
 0.857
CL1_1607
Maf-like protein; Nucleoside triphosphate pyrophosphatase that hydrolyzes dTTP and UTP. May have a dual role in cell division arrest and in preventing the incorporation of modified nucleotides into cellular nucleic acids.
       0.736
CL1_1601
Asparagine synthase; COG0367.
 
   
 0.687
CL1_1598
Putative translation factor, sua5 family; Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine.
       0.569
atpC
V-type ATP synthase subunit C; Produces ATP from ADP in the presence of a proton gradient across the membrane.
 
   
 0.475
engB
GTP-binding protein 1; Necessary for normal cell division and for the maintenance of normal septation.
 
   
 0.473
CL1_1600
Hypothetical protein; COG2247.
  
    0.419
secD
Putative preprotein translocase subunit SecD; Involved in protein export.
 
     0.415
CL1_0630
Hypothetical protein; COG1423.
     
 0.408
Your Current Organism:
Thermococcus cleftensis
NCBI taxonomy Id: 163003
Other names: DSM 27260, KACC 17922, T. cleftensis, Thermococcus cleftensis Hensley et al. 2014, Thermococcus sp. CL1, strain CL1
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