STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CL1_1611methylmalonyl-CoA epimerase; COG0346. (134 aa)    
Predicted Functional Partners:
CL1_1609
methylmalonyl-CoA mutase, C-terminal domain protein; COG2185.
  
 0.999
CL1_1610
Lysine/arginine/ornithine transport system kinase; COG1703.
  
 0.992
CL1_1571
methylmalonyl-CoA mutase, alpha chain; COG1884.
 
  
 0.959
CL1_1608
Hypothetical protein containing PHP domain; COG1387.
       0.801
CL1_1129
Hypothetical protein; COG1143.
 
  
 0.614
CL1_0201
NADH dehydrogenase subunit D; COG0649; Belongs to the complex I 49 kDa subunit family.
  
  
 0.604
CL1_1898
Amino acid transporter; COG0531.
     
 0.589
CL1_0202
NADH dehydrogenase subunit I; COG1143.
  
  
 0.561
CL1_1146
Hypothetical protein containing ferredoxins domain 2; COG1143.
  
  
 0.561
CL1_1614
Chromosome segregation and condensation protein ScpA-like protein; COG1354.
       0.546
Your Current Organism:
Thermococcus cleftensis
NCBI taxonomy Id: 163003
Other names: DSM 27260, KACC 17922, T. cleftensis, Thermococcus cleftensis Hensley et al. 2014, Thermococcus sp. CL1, strain CL1
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