STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CL1_1629ATPase, MinD family 3; COG0455. (259 aa)    
Predicted Functional Partners:
CL1_1628
Hypothetical protein; COG2249.
       0.818
CL1_1627
Hypothetical protein; COG0847.
       0.608
CL1_1630
Stomatin-like protein 1; COG0330.
       0.573
CL1_1631
Hypothetical protein; COG1030.
       0.573
CL1_1626
AMP phosphorylase; Catalyzes the conversion of AMP and phosphate to adenine and ribose 1,5-bisphosphate (R15P). Exhibits phosphorylase activity toward CMP and UMP in addition to AMP. Functions in an archaeal AMP degradation pathway, together with R15P isomerase and RubisCO. Belongs to the thymidine/pyrimidine-nucleoside phosphorylase family. Type 2 subfamily.
       0.501
secD
Putative preprotein translocase subunit SecD; Involved in protein export.
 
     0.452
CL1_1632
Hypothetical protein; COG2319.
       0.430
CL1_1633
Putative DNA glycosylase; COG0122.
       0.430
CL1_1022
Hypothetical protein containing Type II secretion system F domain 2; COG2064.
 
  
 0.410
Your Current Organism:
Thermococcus cleftensis
NCBI taxonomy Id: 163003
Other names: DSM 27260, KACC 17922, T. cleftensis, Thermococcus cleftensis Hensley et al. 2014, Thermococcus sp. CL1, strain CL1
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