STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CL1_1631Hypothetical protein; COG1030. (449 aa)    
Predicted Functional Partners:
CL1_1630
Stomatin-like protein 1; COG0330.
 
  
 0.939
CL1_1632
Hypothetical protein; COG2319.
       0.642
CL1_1633
Putative DNA glycosylase; COG0122.
       0.642
CL1_1628
Hypothetical protein; COG2249.
       0.573
CL1_1629
ATPase, MinD family 3; COG0455.
       0.573
CL1_1634
Hypothetical protein; COG1825.
       0.535
CL1_1499
Hypothetical protein; COG1585.
 
  
0.531
CL1_1714
Hypothetical protein containing NfeD domain; COG1585.
  
  
 0.504
CL1_1635
Hypothetical protein.
       0.500
CL1_0063
Hypothetical protein.
  
  
 0.458
Your Current Organism:
Thermococcus cleftensis
NCBI taxonomy Id: 163003
Other names: DSM 27260, KACC 17922, T. cleftensis, Thermococcus cleftensis Hensley et al. 2014, Thermococcus sp. CL1, strain CL1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.