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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CL1_1654Putative glycosyl transferase protein; COG1215. (412 aa)    
Predicted Functional Partners:
CL1_0273
Putative glycoside hydrolase/deacetylase; COG0726.
  
  
 0.706
CL1_0748
Glycosyl transferase family 2 protein 2; COG0463.
 
  
 0.641
xerA
Integrase-like protein; Site-specific tyrosine recombinase, which acts by catalyzing the cutting and rejoining of the recombining DNA molecules. Belongs to the 'phage' integrase family. XerA subfamily.
 
   
 0.622
CL1_1475
Glucose-1-phosphate thymidylyltransferase-like protein; COG1213; Belongs to the CDP-alcohol phosphatidyltransferase class-I family.
  
  
 0.603
CL1_1655
Hypothetical protein; COG4026.
       0.551
CL1_0993
Putative glycosyl transferase, family 2 protein 1; COG0463.
 
  
 0.532
CL1_0034
Hypothetical protein; COG1028.
  
 
 0.528
CL1_0236
Hypothetical protein; COG0457.
  
 
 0.528
CL1_0297
Hypothetical protein.
  
 
 0.528
CL1_0476
Hypothetical protein; COG0457.
  
 
 0.528
Your Current Organism:
Thermococcus cleftensis
NCBI taxonomy Id: 163003
Other names: DSM 27260, KACC 17922, T. cleftensis, Thermococcus cleftensis Hensley et al. 2014, Thermococcus sp. CL1, strain CL1
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