STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CL1_1668Hypothetical protein containing xylose isomerase domain; COG1082. (250 aa)    
Predicted Functional Partners:
CL1_1670
Hypothetical protein TrkA C-terminal domain 1; COG3273.
 
     0.863
CL1_1671
Hypothetical protein TrkA C-terminal domain 2; COG3273.
 
     0.862
CL1_1667
Hypothetical protein; COG1042.
       0.829
CL1_1669
Divalent cation transporter, MgtE-like protein; COG1824.
       0.822
CL1_1666
Hypothetical protein; COG1042.
       0.812
CL1_0365
Bifunctional D-arabino 3-hexulose-6-phosphate formaldehyde lyase/phosphohexuloisomerase; COG0794.
 
    0.633
CL1_1672
Hypothetical protein; COG0806.
       0.462
CL1_1013
Hypothetical protein containing ribokinase-like domain 1; COG0524; Belongs to the carbohydrate kinase PfkB family.
 
  
 0.457
Your Current Organism:
Thermococcus cleftensis
NCBI taxonomy Id: 163003
Other names: DSM 27260, KACC 17922, T. cleftensis, Thermococcus cleftensis Hensley et al. 2014, Thermococcus sp. CL1, strain CL1
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