STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CL1_1671Hypothetical protein TrkA C-terminal domain 2; COG3273. (192 aa)    
Predicted Functional Partners:
CL1_1669
Divalent cation transporter, MgtE-like protein; COG1824.
 
     0.860
CL1_1670
Hypothetical protein TrkA C-terminal domain 1; COG3273.
 
    
0.833
CL1_1668
Hypothetical protein containing xylose isomerase domain; COG1082.
 
     0.696
CL1_1672
Hypothetical protein; COG0806.
       0.661
CL1_0154
Metalloprotease containing JAB1/MPN domain; COG1310.
 
     0.532
CL1_1210
Hypothetical protein; COG1340.
 
     0.489
CL1_1489
Heat shock regulator; COG1777.
  
     0.488
CL1_1667
Hypothetical protein; COG1042.
       0.463
CL1_0461
Hypothetical protein; COG2047.
  
     0.436
CL1_1666
Hypothetical protein; COG1042.
       0.432
Your Current Organism:
Thermococcus cleftensis
NCBI taxonomy Id: 163003
Other names: DSM 27260, KACC 17922, T. cleftensis, Thermococcus cleftensis Hensley et al. 2014, Thermococcus sp. CL1, strain CL1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.