STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CL1_1686iron(III) ABC transporter permease; COG1178. (612 aa)    
Predicted Functional Partners:
CL1_1687
iron(III) ABC transporter periplasmic protein; COG1840.
 
  
 0.961
CL1_1685
iron(III) ABC transporter ATPase; COG3839.
 
    0.923
CL1_1683
Metallophosphoesterase 3; COG1409.
 
     0.797
CL1_1684
Hypothetical protein; COG2457.
       0.734
CL1_1514
Molybdate/tungstate ABC type transporter ATPase; COG3839.
 
    0.715
CL1_1711
Thiamine ABC transporter periplasmic binding protein; COG4143.
 
  
 0.693
CL1_0709
ABC type sugar transporter ATPase; COG3839.
 
    0.651
CL1_0889
Maltooligosaccharide transport system ATP-binding protein; COG3839.
 
    0.532
CL1_1688
Hypothetical protein.
       0.489
CL1_0035
Putative phosphomethylpyrimidine kinase; COG1992.
 
  
 0.475
Your Current Organism:
Thermococcus cleftensis
NCBI taxonomy Id: 163003
Other names: DSM 27260, KACC 17922, T. cleftensis, Thermococcus cleftensis Hensley et al. 2014, Thermococcus sp. CL1, strain CL1
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