STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CL1_1687iron(III) ABC transporter periplasmic protein; COG1840. (479 aa)    
Predicted Functional Partners:
CL1_1686
iron(III) ABC transporter permease; COG1178.
 
  
 0.961
CL1_0708
ABC type iron(III) transporter permease; COG1178.
 
  
 0.836
CL1_1683
Metallophosphoesterase 3; COG1409.
 
     0.826
CL1_1685
iron(III) ABC transporter ATPase; COG3839.
 
     0.665
CL1_1688
Hypothetical protein.
       0.639
CL1_1446
Dipeptide ABC transporter substrate binding protein; COG0747.
 
   
 0.589
CL1_1514
Molybdate/tungstate ABC type transporter ATPase; COG3839.
 
    0.561
tyrS
tyrosyl-tRNA synthetase; Catalyzes the attachment of tyrosine to tRNA(Tyr) in a two- step reaction: tyrosine is first activated by ATP to form Tyr-AMP and then transferred to the acceptor end of tRNA(Tyr); Belongs to the class-I aminoacyl-tRNA synthetase family. TyrS type 4 subfamily.
 
     0.557
CL1_1684
Hypothetical protein; COG2457.
       0.541
CL1_1342
Hypothetical protein containing HAD-like domain 7; COG0463.
     
 0.479
Your Current Organism:
Thermococcus cleftensis
NCBI taxonomy Id: 163003
Other names: DSM 27260, KACC 17922, T. cleftensis, Thermococcus cleftensis Hensley et al. 2014, Thermococcus sp. CL1, strain CL1
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