STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CL1_1690Transcription regulator, Lrp/AsnC family 2; COG1522. (157 aa)    
Predicted Functional Partners:
CL1_1691
DEAD/DEAH box helicase; COG1202.
       0.796
tyrS
tyrosyl-tRNA synthetase; Catalyzes the attachment of tyrosine to tRNA(Tyr) in a two- step reaction: tyrosine is first activated by ATP to form Tyr-AMP and then transferred to the acceptor end of tRNA(Tyr); Belongs to the class-I aminoacyl-tRNA synthetase family. TyrS type 4 subfamily.
       0.733
CL1_1107
Transcription regulator, AsnC family 2; COG1522.
  
     0.684
CL1_1688
Hypothetical protein.
       0.527
CL1_0157
Putative transcription regulator, AsnC family 1; COG1522.
  
     0.467
CL1_0577
Putative transcription regulator, Lrp/AsnC family; COG1522.
   
 
 0.415
CL1_1168
Transcription regulator, AsnC family 3; COG1522.
   
 
 0.415
CL1_1445
Putative transcription regulator, AsnC family 2; COG1522.
   
 
 0.415
CL1_1687
iron(III) ABC transporter periplasmic protein; COG1840.
       0.405
Your Current Organism:
Thermococcus cleftensis
NCBI taxonomy Id: 163003
Other names: DSM 27260, KACC 17922, T. cleftensis, Thermococcus cleftensis Hensley et al. 2014, Thermococcus sp. CL1, strain CL1
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