STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CL1_1695Cobalt ABC transporter permease 2, CbiQ; COG0619. (253 aa)    
Predicted Functional Partners:
CL1_1696
Cobalt ABC transporter ATPase 2; COG1122.
 
 0.997
CL1_1697
Putative biotin biosynthesis protein BioY; COG1268.
 
 0.991
CL1_0296
Cobalt transporter ATP-binding protein; COG1122.
 
 0.982
CL1_0465
Cobalt ABC transporter ATPase 1; Part of an ABC transporter complex. Responsible for energy coupling to the transport system.
 
 
 0.832
CL1_1121
Hypothetical protein; COG4720.
 
 
 0.737
CL1_0462
Cobalt ABC transporter permease, CbiM; COG0310.
 
  
 0.651
CL1_0463
Cobalt ABC transport protein, CbiN; COG0310.
  
  
 0.600
truA
Putative pseudouridine synthase; Formation of pseudouridine at positions 38, 39 and 40 in the anticodon stem and loop of transfer RNAs; Belongs to the tRNA pseudouridine synthase TruA family.
  
  
 0.483
adk
Putative adenylate kinase; Catalyzes the reversible transfer of the terminal phosphate group between ATP and AMP. Plays an important role in cellular energy homeostasis and in adenine nucleotide metabolism; Belongs to the adenylate kinase family.
 
  
 0.449
Your Current Organism:
Thermococcus cleftensis
NCBI taxonomy Id: 163003
Other names: DSM 27260, KACC 17922, T. cleftensis, Thermococcus cleftensis Hensley et al. 2014, Thermococcus sp. CL1, strain CL1
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