STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CL1_1710Ca2+/Na+ antiporter; COG0530. (310 aa)    
Predicted Functional Partners:
CL1_1708
Hypothetical protein; COG1432.
       0.880
CL1_1709
Hypothetical protein; COG1432.
       0.880
CL1_1711
Thiamine ABC transporter periplasmic binding protein; COG4143.
       0.784
apgM
Putative cofactor-independent phosphoglycerate mutase; Catalyzes the interconversion of 2-phosphoglycerate and 3- phosphoglycerate.
 
    0.651
tmcA
Hypothetical protein; Catalyzes the formation of N(4)-acetylcytidine (ac(4)C) at the wobble position of tRNA(Met), by using acetyl-CoA as an acetyl donor and ATP (or GTP).
       0.595
CL1_0249
Hypothetical protein containing Histidine triad-like motif; COG0537.
  
    0.534
CL1_1802
Arsenical pump-driving ATPase; COG0003.
  
   0.504
CL1_1888
Sodium/hydrogen exchanger; COG0025.
 
 
 
 0.470
CL1_1707
Hypothetical protein; COG0825.
       0.459
CL1_1413
Na+/H+ antiporter; COG0025.
 
 
 
 0.442
Your Current Organism:
Thermococcus cleftensis
NCBI taxonomy Id: 163003
Other names: DSM 27260, KACC 17922, T. cleftensis, Thermococcus cleftensis Hensley et al. 2014, Thermococcus sp. CL1, strain CL1
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