STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CL1_1722Hypothetical protein containing WD40 repeat; COG2319. (678 aa)    
Predicted Functional Partners:
CL1_1720
Putative Serine/threonine protein phosphatase; COG0631.
 
 0.901
tbp
TATA-box binding protein; General factor that plays a role in the activation of archaeal genes transcribed by RNA polymerase. Binds specifically to the TATA box promoter element which lies close to the position of transcription initiation.
   
 0.840
CL1_1721
Putative Serine/threonine protein kinase; COG0515.
 
 0.825
CL1_1412
Putative histone deacetylase; COG0123.
  
 0.818
CL1_1570
Hypothetical protein; COG1236.
    
 0.798
CL1_1555
Protein-tyrosine phosphatase; COG2453.
  
 0.772
CL1_1724
Putiative protein kinase 1; COG0515.
 
 0.756
CL1_1723
Putative Protein phosphatase 2C-like protein; COG0631.
 
 
 0.726
CL1_1027
Hypothetical protein; COG1161.
  
 0.706
CL1_1727
Putiative protein kinase 3; COG0515.
 
 0.694
Your Current Organism:
Thermococcus cleftensis
NCBI taxonomy Id: 163003
Other names: DSM 27260, KACC 17922, T. cleftensis, Thermococcus cleftensis Hensley et al. 2014, Thermococcus sp. CL1, strain CL1
Server load: medium (42%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.