STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CL1_1728Hypothetical protein; COG2319. (691 aa)    
Predicted Functional Partners:
CL1_1727
Putiative protein kinase 3; COG0515.
 
 0.903
CL1_1726
Putiative protein kinase 2; COG0515.
 
 0.874
tbp
TATA-box binding protein; General factor that plays a role in the activation of archaeal genes transcribed by RNA polymerase. Binds specifically to the TATA box promoter element which lies close to the position of transcription initiation.
   
 0.840
CL1_1720
Putative Serine/threonine protein phosphatase; COG0631.
 
 0.818
CL1_1570
Hypothetical protein; COG1236.
    
 0.798
CL1_1412
Putative histone deacetylase; COG0123.
   
 0.794
CL1_1555
Protein-tyrosine phosphatase; COG2453.
  
 0.772
CL1_1725
Hypothetical protein; COG0464; Belongs to the AAA ATPase family.
  
 
 0.717
CL1_1724
Putiative protein kinase 1; COG0515.
 
 0.715
CL1_1027
Hypothetical protein; COG1161.
  
 0.706
Your Current Organism:
Thermococcus cleftensis
NCBI taxonomy Id: 163003
Other names: DSM 27260, KACC 17922, T. cleftensis, Thermococcus cleftensis Hensley et al. 2014, Thermococcus sp. CL1, strain CL1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.