Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CL1_1733Hypothetical protein; COG1357. (377 aa)    
Predicted Functional Partners:
CL1_1731
Hypothetical protein; COG1621.
 
     0.592
CL1_0579
Hypothetical protein containing phosphoribosyltransferase-lilke domain 1; COG0503.
  
    0.539
CL1_0824
Hypothetical protein containing Trimeric LpxA-like domain; COG0110.
  
  
 0.526
CL1_0937
Trk-type pottasium transport system, NAD-binding component; COG0569.
     
 0.508
CL1_1342
Hypothetical protein containing HAD-like domain 7; COG0463.
  
 
 0.500
CL1_1728
Hypothetical protein; COG2319.
 
     0.488
CL1_0980
Putative cation efflux system protein; COG0053.
   
 
 0.461
CL1_0107
iron(II) transport system protein B; COG0370.
  
  
 0.453
CL1_0078
Hypothetical protein; COG3595.
   
   0.445
CL1_1722
Hypothetical protein containing WD40 repeat; COG2319.
 
     0.434
Your Current Organism:
Thermococcus cleftensis
NCBI taxonomy Id: 163003
Other names: DSM 27260, KACC 17922, T. cleftensis, Thermococcus cleftensis Hensley et al. 2014, Thermococcus sp. CL1, strain CL1
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