STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CL1_1802Arsenical pump-driving ATPase; COG0003. (330 aa)    
Predicted Functional Partners:
CL1_1803
Hypothetical protein.
 
     0.959
CL1_1800
Hypothetical protein.
 
     0.956
CL1_1804
Carbon starvation protein A; COG1966.
 
     0.923
CL1_1801
Hypothetical protein; COG2151.
       0.916
pyrF
Orotidine 5'-phosphate decarboxylase; Catalyzes the decarboxylation of orotidine 5'-monophosphate (OMP) to uridine 5'-monophosphate (UMP); Belongs to the OMP decarboxylase family. Type 1 subfamily.
    
 
 0.808
CL1_1805
Pyruvate carboxylase subunit B; COG5016.
  
    0.775
CL1_1798
Hypothetical protein containing alpha/beta hydrolase fold; COG2267.
       0.658
CL1_1648
Integral membrane protein rhomboid-like protein; COG0705.
  
   0.523
CL1_0154
Metalloprotease containing JAB1/MPN domain; COG1310.
   
   0.508
CL1_1564
Hypothetical protein containing JAB1/MPN domain; COG1310.
   
   0.508
Your Current Organism:
Thermococcus cleftensis
NCBI taxonomy Id: 163003
Other names: DSM 27260, KACC 17922, T. cleftensis, Thermococcus cleftensis Hensley et al. 2014, Thermococcus sp. CL1, strain CL1
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