STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CL1_1808Proton/glutamate symporter; COG1301. (424 aa)    
Predicted Functional Partners:
CL1_1898
Amino acid transporter; COG0531.
 
 
 0.814
CL1_1807
Biotin-protein ligase; COG0340.
     
 0.638
CL1_1804
Carbon starvation protein A; COG1966.
 
  
 0.605
CL1_0638
Glutamate synthase beta chain-related oxidoreductase containing 2Fe-2S and 4Fe-4S clusters; COG0493.
     
 0.587
CL1_1870
Aromatic amino acid permease; COG0814.
   
 
 0.572
CL1_1809
Hypothetical protein; COG1722.
       0.563
CL1_1382
Sodium:solute symporter family protein; COG0591; Belongs to the sodium:solute symporter (SSF) (TC 2.A.21) family.
  
  
 0.545
CL1_1806
Fructose 1,6-bisphosphate aldolase; COG1830.
       0.514
CL1_0543
Sodium-dependent transporter; COG0733; Belongs to the sodium:neurotransmitter symporter (SNF) (TC 2.A.22) family.
 
  
 0.481
CL1_1810
Hypothetical protein containing alanyl tRNA synthase domain; COG2872.
       0.458
Your Current Organism:
Thermococcus cleftensis
NCBI taxonomy Id: 163003
Other names: DSM 27260, KACC 17922, T. cleftensis, Thermococcus cleftensis Hensley et al. 2014, Thermococcus sp. CL1, strain CL1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.