STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CL1_1815CRISPR-associated protein Cas5; COG1688. (227 aa)    
Predicted Functional Partners:
CL1_1816
CRISPR-associated autoregulator, DevR family 2; COG1857.
 
 
 0.968
CL1_1818
CRISPR-associated Cas6 family protein 2; COG1583.
 
   
 0.864
CL1_1817
Hypothetical protein.
       0.804
CL1_0377
CRISPR-associated autoregulator, DevR family 1; COG1857.
 
 
 0.770
CL1_1811
CRISPR-associated helicase Cas3 domain-containing protein; COG1203.
 
 
 0.736
CL1_0507
Glycosyl transferase family protein 6; COG1807.
  
     0.689
CL1_1964
Hypothetical protein; COG1672.
 
     0.675
CL1_0379
CRISPR-associated helicase Cas3; COG1203.
 
 
 0.669
CL1_0376
CRISPR-associated CXXC_CXXC protein Cst1.
 
   
 0.661
CL1_0839
Putative oligosaccharyl transferase, STT3 subunit 1; COG1287.
  
   
 0.657
Your Current Organism:
Thermococcus cleftensis
NCBI taxonomy Id: 163003
Other names: DSM 27260, KACC 17922, T. cleftensis, Thermococcus cleftensis Hensley et al. 2014, Thermococcus sp. CL1, strain CL1
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