STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CL1_1818CRISPR-associated Cas6 family protein 2; COG1583. (237 aa)    
Predicted Functional Partners:
CL1_1815
CRISPR-associated protein Cas5; COG1688.
 
   
 0.864
CL1_1816
CRISPR-associated autoregulator, DevR family 2; COG1857.
 
   
 0.831
CL1_1817
Hypothetical protein.
       0.786
CL1_1313
Replication factor C small subunit; COG1372.
  
     0.578
CL1_0924
Hypothetical protein; COG0037.
 
   
 0.540
CL1_1410
Hypothetical protein; COG1542.
  
     0.469
CL1_0494
Hypothetical protein; COG1226.
  
     0.459
CL1_1957
CRISPR-associated RAMP protein, Csm5 family; COG1332.
 
   
 0.454
CL1_0897
Hypothetical protein containing SAM domain 5; COG0500.
  
     0.451
rpl18a
50S ribosomal protein LX; COG2157.
  
     0.448
Your Current Organism:
Thermococcus cleftensis
NCBI taxonomy Id: 163003
Other names: DSM 27260, KACC 17922, T. cleftensis, Thermococcus cleftensis Hensley et al. 2014, Thermococcus sp. CL1, strain CL1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.