Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
CL1_1836Rubrerythrin-like protein 4; COG1633. (159 aa)    
Predicted Functional Partners:
CL1_1835
GNAT family acetyltransferase 3; COG0454.
       0.842
CL1_1837
Hypothetical protein; COG1633.
 
     0.685
CL1_1895
Putative peroxiredoxin, bacterioferritin comigratory protein; COG1225.
     
 0.666
CL1_1840
Superoxide reductase-like protein; COG2033.
 
  
 0.555
CL1_0147
Hydrogenase-specific maturation endopeptidase; COG0680.
  
     0.502
CL1_1841
Rubredoxin; Rubredoxin is a small nonheme, iron protein lacking acid- labile sulfide. Its single Fe, chelated to 4 Cys, functions as an electron acceptor and may also stabilize the conformation of the molecule.
  
  
 0.445
CL1_1346
Putative transcription regulator, penicillinase repressor family; COG3682.
  
     0.440
CL1_1103
Hypothetical protein; COG0535.
 
    0.415
Your Current Organism:
Thermococcus cleftensis
NCBI taxonomy Id: 163003
Other names: DSM 27260, KACC 17922, T. cleftensis, Thermococcus cleftensis Hensley et al. 2014, Thermococcus sp. CL1, strain CL1
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