Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
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Co-expression
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[Homology]
Score
CL1_1843Type A flavoprotein; COG0426. (408 aa)    
Predicted Functional Partners:
CL1_1842
Rubrerythrin; COG1592.
 
  
 0.922
CL1_1840
Superoxide reductase-like protein; COG2033.
 
  
 0.907
CL1_1841
Rubredoxin; Rubredoxin is a small nonheme, iron protein lacking acid- labile sulfide. Its single Fe, chelated to 4 Cys, functions as an electron acceptor and may also stabilize the conformation of the molecule.
 
  
 0.843
CL1_1373
Putative NADH oxidase 1; COG0446.
    
 0.832
CL1_1360
ferredoxin-NADP(+) reductase subunit alpha 1; COG0543.
  
   
 0.543
CL1_0208
Hypothetical protein; COG2461.
 
   
 0.400
Your Current Organism:
Thermococcus cleftensis
NCBI taxonomy Id: 163003
Other names: DSM 27260, KACC 17922, T. cleftensis, Thermococcus cleftensis Hensley et al. 2014, Thermococcus sp. CL1, strain CL1
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