Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CL1_1849Hypothetical protein; COG0471. (278 aa)    
Predicted Functional Partners:
CL1_1850
Transcription regulator, ArsR family 9; COG0640.
  
  
 0.648
CL1_1851
Cadmium-translocating P-type ATPase; COG2217.
     
 0.633
CL1_1268
Arsenical pump membrane protein; COG1055.
  
     0.610
CL1_1898
Amino acid transporter; COG0531.
     
 0.600
CL1_1848
Hypothetical protein.
       0.498
CL1_1847
Hypothetical protein; COG3371.
       0.443
Your Current Organism:
Thermococcus cleftensis
NCBI taxonomy Id: 163003
Other names: DSM 27260, KACC 17922, T. cleftensis, Thermococcus cleftensis Hensley et al. 2014, Thermococcus sp. CL1, strain CL1
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