STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CL1_1857ATP-binding transport protein; COG1131. (283 aa)    
Predicted Functional Partners:
CL1_1858
Hypothetical protein.
 
  
  0.993
CL1_1859
Hypothetical protein.
 
  
  0.992
CL1_1677
ABC type multidrug transporter permease; COG0842.
 
  
 0.622
CL1_1856
Putative transcription regulator, containing DNA-binding HTH domain; COG3413.
       0.610
CL1_1860
Hypothetical protein; COG4961.
       0.461
CL1_1160
ABC type transporter permease 1; COG0842.
 
  
 0.441
CL1_0094
Na+-driven multidrug efflux pump protein; COG0534.
  
  
 0.416
CL1_0509
Multi antimicrobial extrusion protein MatE 1; COG0534.
  
  
 0.416
CL1_0510
Multi antimicrobial extrusion protein MatE 2; COG0534.
  
  
 0.416
Your Current Organism:
Thermococcus cleftensis
NCBI taxonomy Id: 163003
Other names: DSM 27260, KACC 17922, T. cleftensis, Thermococcus cleftensis Hensley et al. 2014, Thermococcus sp. CL1, strain CL1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.