STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CL1_1888Sodium/hydrogen exchanger; COG0025. (426 aa)    
Predicted Functional Partners:
CL1_1898
Amino acid transporter; COG0531.
   
 
 0.682
crcB
Camphor resistance protein CrcB; Important for reducing fluoride concentration in the cell, thus reducing its toxicity; Belongs to the CrcB (TC 9.B.71) family.
     
 0.586
CL1_1886
Hypothetical protein; COG1993.
       0.562
CL1_1884
Putative mechanosensitive channel; COG0668.
 
   
 0.561
CL1_1710
Ca2+/Na+ antiporter; COG0530.
 
 
 
 0.527
CL1_1885
Bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; COG0452.
   
 
 0.526
CL1_0582
Hypothetical protein; COG0639.
   
 
 0.446
CL1_0807
DNA helicase; COG1112.
   
 
 0.446
CL1_1588
Putative metallophosphoesterase; COG0639.
   
 
 0.446
CL1_0295
Putative potassium uptake protein; COG0168.
 
 
 
 0.444
Your Current Organism:
Thermococcus cleftensis
NCBI taxonomy Id: 163003
Other names: DSM 27260, KACC 17922, T. cleftensis, Thermococcus cleftensis Hensley et al. 2014, Thermococcus sp. CL1, strain CL1
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